1/9/2023 0 Comments Gtr evolution c![]() ![]() checkConsistency.BrownianInsertor: Check object consistency.checkConsistency.BinarySubst: Check object consistency.checkConsistency.AminoAcidSubst: Check object consistency.checkConsistency.Alphabet: Check object consistency.buildFromPAML.CodonSubst: Build rate matrix from PAML file.buildFromPAML.AminoAcidSubst: Build rate matrix from PAML file.BrownianPath.BrownianInsertor: Generate a Brownian path.BrownianInsertor: The BrownianInsertor class.BinarySequence: The BinarySequence class.BinaryAlphabet: The BinaryAlphabet class.attachSeqToNode.PhyloSim: Assotiate a Sequence object with a given node of a phylo.attachProcess.Site: Attach a Process object to a Site object.attachProcess.Sequence: Attach a Process object to a set of Site objects aggregated.attachHookToNode.PhyloSim: Attach a callback function to a given node of a phylo object.as.character.ToleranceSubstitution: Return the character representation of a.as.character.Site: Get the character representation of a Site object.as.character.Sequence: Get the string representation of a Sequence object.as.character.QMatrix: Return the character representation of a QMatrix object.as.character.Process: Get the character representation of a Process object.as.character.PhyloSim: Return the character representation of a PhyloSim object.as.character.GeneralSubstitution: Return the character representation of a GeneralSubstitution.as.character.Event: Get the character representation of an Event object.as.character.Alphabet: Get the character representation of an Alphabet object.areSynonymous.CodonAlphabet: Check whether two codons are synonymous.AminoAcidSubst: The AminoAcidSubst class.AminoAcidSequence: The AminoAcidSequence class.AminoAcidAlphabet: The AminoAcidAlphabet class.000=.Process: Check whether the two supplied Process objects are identical.000=.Alphabet: Check if two alaphabet objects have the same symbol set.
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